North America leads in FMT research and clinical applications, with numerous certified centers offering advanced microbiome restoration therapies. These clinics follow FDA guidelines and Health Canada regulations for safe and effective treatment.

United States

Mayo Clinic - Microbiome Program

Rochester, Minnesota

World-renowned medical center with comprehensive FMT program for C. difficile and IBD research trials.

  • ✓ FDA-approved protocols
  • ✓ Clinical trials available
  • ✓ Insurance accepted
  • ✓ Pediatric and adult treatment

Phone: 507-284-2511

Specialties: C. diff, IBD, IBS

Johns Hopkins - Division of Gastroenterology

Baltimore, Maryland

Leading academic medical center with extensive FMT experience and ongoing microbiome research programs.

  • ✓ Comprehensive screening
  • ✓ Multiple delivery methods
  • ✓ Research participation options
  • ✓ Telemedicine consultations

Phone: 410-955-5000

Specialties: C. diff, Crohn's, UC

Massachusetts General Hospital

Boston, Massachusetts

Pioneer in FMT research with established protocols and extensive clinical experience since 2011.

  • ✓ Stool bank partnership
  • ✓ Capsule FMT available
  • ✓ Pediatric programs
  • ✓ Clinical trials

Phone: 617-726-2000

Specialties: C. diff, IBD, Autism research

Cleveland Clinic - Digestive Disease Institute

Cleveland, Ohio

Top-ranked gastroenterology program with comprehensive FMT services and innovative treatment approaches.

  • ✓ Same-day procedures
  • ✓ International patients welcome
  • ✓ Insurance coordination
  • ✓ Follow-up care program

Phone: 216-444-7000

Specialties: C. diff, IBD, IBS

Cedars-Sinai Medical Center

Los Angeles, California

Advanced FMT program with focus on personalized microbiome medicine and cutting-edge research.

  • ✓ Precision medicine approach
  • ✓ Microbiome analysis
  • ✓ Outpatient procedures
  • ✓ Research trials

Phone: 310-423-3277

Specialties: C. diff, SIBO, IBS

Mount Sinai - Feinstein IBD Center

New York, New York

Specialized IBD center with extensive FMT experience and innovative microbiome therapies.

  • ✓ IBD specialized
  • ✓ Pediatric FMT
  • ✓ Clinical research
  • ✓ Multidisciplinary care

Phone: 212-241-6500

Specialties: IBD, C. diff, Pediatric GI

Canada

Toronto General Hospital - UHN

Toronto, Ontario

Canada's largest FMT program with extensive experience in treating recurrent C. difficile infections.

  • ✓ Health Canada approved
  • ✓ Provincial coverage available
  • ✓ Donor screening program
  • ✓ Research opportunities

Phone: 416-340-4800

Specialties: C. diff, IBD research

Vancouver General Hospital

Vancouver, British Columbia

Leading West Coast center for FMT with comprehensive microbiome restoration programs.

  • ✓ Outpatient procedures
  • ✓ Capsule FMT available
  • ✓ MSP coverage
  • ✓ Clinical trials

Phone: 604-875-4111

Specialties: C. diff, UC, Crohn's

McGill University Health Centre

Montreal, Quebec

Academic medical center with active FMT research program and clinical services in both English and French.

  • ✓ Bilingual services
  • ✓ Research participation
  • ✓ RAMQ coverage
  • ✓ Pediatric programs

Phone: 514-934-1934

Specialties: C. diff, IBD, Pediatric GI

Important Note: This directory is for informational purposes only. Always verify current services, insurance coverage, and treatment availability directly with the clinic. FMT availability may vary based on indication and local regulations.

Disclaimer: The information provided on this website is for educational purposes only and should not be considered medical advice. Always consult with healthcare professionals for medical concerns. FMT treatment should only be performed by qualified medical professionals in certified clinical settings.